CHID1 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CHID1

Chitinase domain-containing protein 1. (393 aa)

Predicted Functional Partners:

WDR90

0.643

SLC35B4

0.615

RAD21

0.559

RAD21L1

0.559

ENKUR

0.545

TIMM21

0.521

SLC35D2

0.520

EFHB

0.510

HSPA9

0.510

KCTD3

0.465

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHID1	EFHB	ENSSCAP00000005259	ENSSCAP00000021110	Chitinase domain-containing protein 1.	EF-hand domain-containing family member B.	0.510
CHID1	ENKUR	ENSSCAP00000005259	ENSSCAP00000013354	Chitinase domain-containing protein 1.	Enkurin.	0.545
CHID1	HSPA9	ENSSCAP00000005259	ENSSCAP00000023217	Chitinase domain-containing protein 1.	Stress-70 protein, mitochondrial isoform X2.	0.510
CHID1	KCTD3	ENSSCAP00000005259	ENSSCAP00000007530	Chitinase domain-containing protein 1.	BTB/POZ domain-containing protein KCTD3 isoform X1.	0.465
CHID1	RAD21	ENSSCAP00000005259	ENSSCAP00000008604	Chitinase domain-containing protein 1.	Double-strand-break repair protein rad21 homolog.	0.559
CHID1	RAD21L1	ENSSCAP00000005259	ENSSCAP00000019928	Chitinase domain-containing protein 1.	Double-strand-break repair protein rad21-like protein 1.	0.559
CHID1	SLC35B4	ENSSCAP00000005259	ENSSCAP00000017173	Chitinase domain-containing protein 1.	Solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4.	0.615
CHID1	SLC35D2	ENSSCAP00000005259	ENSSCAP00000004362	Chitinase domain-containing protein 1.	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter isoform X1.	0.520
CHID1	TIMM21	ENSSCAP00000005259	ENSSCAP00000009932	Chitinase domain-containing protein 1.	Mitochondrial import inner membrane translocase subunit TIM21.	0.521
CHID1	WDR90	ENSSCAP00000005259	ENSSCAP00000017599	Chitinase domain-containing protein 1.	WD repeat-containing protein 90 isoform X3.	0.643
EFHB	CHID1	ENSSCAP00000021110	ENSSCAP00000005259	EF-hand domain-containing family member B.	Chitinase domain-containing protein 1.	0.510
EFHB	ENKUR	ENSSCAP00000021110	ENSSCAP00000013354	EF-hand domain-containing family member B.	Enkurin.	0.842
EFHB	HSPA9	ENSSCAP00000021110	ENSSCAP00000023217	EF-hand domain-containing family member B.	Stress-70 protein, mitochondrial isoform X2.	0.510
EFHB	RAD21	ENSSCAP00000021110	ENSSCAP00000008604	EF-hand domain-containing family member B.	Double-strand-break repair protein rad21 homolog.	0.445
EFHB	RAD21L1	ENSSCAP00000021110	ENSSCAP00000019928	EF-hand domain-containing family member B.	Double-strand-break repair protein rad21-like protein 1.	0.445
EFHB	WDR90	ENSSCAP00000021110	ENSSCAP00000017599	EF-hand domain-containing family member B.	WD repeat-containing protein 90 isoform X3.	0.987
ENKUR	CHID1	ENSSCAP00000013354	ENSSCAP00000005259	Enkurin.	Chitinase domain-containing protein 1.	0.545
ENKUR	EFHB	ENSSCAP00000013354	ENSSCAP00000021110	Enkurin.	EF-hand domain-containing family member B.	0.842
ENKUR	HSPA9	ENSSCAP00000013354	ENSSCAP00000023217	Enkurin.	Stress-70 protein, mitochondrial isoform X2.	0.510
ENKUR	RAD21	ENSSCAP00000013354	ENSSCAP00000008604	Enkurin.	Double-strand-break repair protein rad21 homolog.	0.569