STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTULINUbiquitin thioesterase otulin. (403 aa)    
Predicted Functional Partners:
SNX27
Sorting nexin-27.
    
 
 0.940
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.894
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.887
UBB
Ubiquitin B.
    
 0.856
UBC
Polyubiquitin-C.
    
 0.856
ENOPH1
Enolase-phosphatase E1.
      
 0.722
ENSSCAP00000002302
annotation not available
    
  0.690
FAM20C
Extracellular serine/threonine protein kinase FAM20C.
    
 
 0.682
OTUD7A
OTU domain-containing protein 7A isoform X2.
    
 
 0.644
TPH2
Tryptophan 5-hydroxylase 2.
      
 0.632
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.