STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYSTLysosomal-trafficking regulator isoform X1. (3806 aa)    
Predicted Functional Partners:
ATG5
Autophagy protein 5 isoform X1.
    
 0.699
FIG4
Phosphatidylinositol 3,5-bisphosphate 5-phosphatase.
   
  
 0.694
ESR1
LOW QUALITY PROTEIN: estrogen receptor.
      
 0.692
ATG12
Ubiquitin-like protein ATG12.
    
 0.639
ATG16L1
Autophagy-related protein 16-1 isoform X2.
    
 0.610
VTA1
Vacuolar protein sorting-associated protein VTA1 homolog isoform X1.
    
 
 0.570
SQSTM1
Sequestosome-1 isoform X1.
   
 
 0.503
MMUT
Methylmalonyl-CoA mutase, mitochondrial.
      
 0.477
STX11
Syntaxin 11.
      
 0.475
SMPD2
Sphingomyelin phosphodiesterase 2.
     
 0.470
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.