STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCAT2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial. (423 aa)    
Predicted Functional Partners:
LOC103821319
L-threonine 3-dehydrogenase, mitochondrial-like.
 
 
 0.981
ENSSCAP00000015369
Probable low-specificity L-threonine aldolase 2 isoform X1.
  
 
 0.953
SHMT1
Serine hydroxymethyltransferase, cytosolic.
  
 
 0.945
GLDC
Glycine dehydrogenase (decarboxylating), mitochondrial.
  
 
 0.935
SARDH
Sarcosine dehydrogenase, mitochondrial.
  
 0.929
AGXT2
Alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase.
   
 0.924
PIPOX
Peroxisomal sarcosine oxidase isoform X1.
  
 
 0.924
GNMT
Glycine N-methyltransferase.
   
 
 0.915
DAO
D-amino-acid oxidase isoform X1.
  
 
 0.912
ALAS1
5-aminolevulinate synthase, nonspecific, mitochondrial.
  
  
 
0.909
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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