Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPF3ARegulator of nonsense transcripts 3A. (453 aa)    
Predicted Functional Partners:
UPF2
Regulator of nonsense transcripts 2.
   
 0.988
UPF1
Regulator of nonsense transcripts 1 isoform X1.
    
 0.988
EIF4A3
Eukaryotic initiation factor 4A-III.
   
 0.950
MAGOH
Protein mago nashi homolog.
    
 0.943
SMG5
Protein SMG5.
   
 0.941
CASC3
CASC3 exon junction complex subunit.
    
 0.932
RNPS1
RNA-binding protein with serine-rich domain 1.
    
 0.929
ENSSCAP00000012048
annotation not available
   
 0.921
SMG6
Telomerase-binding protein EST1A isoform X1.
   
 0.917
ALYREF
LOW QUALITY PROTEIN: THO complex subunit 4.
    
 0.909
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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