Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPERibulose-phosphate 3-epimerase. (143 aa)    
Predicted Functional Partners:
TKT
Transketolase.
  
 0.995
RPIA
Ribose 5-phosphate isomerase A.
  
 0.994
PGD
6-phosphogluconate dehydrogenase, decarboxylating.
   
 0.979
XYLB
Xylulose kinase isoform X1.
   
 0.966
FGGY
FGGY carbohydrate kinase domain-containing protein isoform X1.
     
 0.907
TALDO1
Transaldolase.
  
 0.878
BCKDHA
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial.
    
 0.812
H6PD
GDH/6PGL endoplasmic bifunctional protein.
  
 
 0.812
RBM45
RNA-binding protein 45.
   
 0.717
G6PD
Glucose-6-phosphate dehydrogenase.
  
 
 0.658
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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