STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103813605Uncharacterized LOC103813605. (354 aa)    
Predicted Functional Partners:
VPS26A
Vacuolar protein sorting-associated protein 26A.
    
 0.864
VPS29
Vacuolar protein sorting-associated protein 29 isoform X1.
     
 0.863
VPS26B
LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 26B.
    
 0.852
VPS35
Vacuolar protein sorting-associated protein 35.
    
 0.834
SNX27
Sorting nexin-27.
    
 0.790
CCDC84
Coiled-coil domain containing 84.
      
 0.622
SNX17
Sorting nexin-17 isoform X2.
    
 0.575
CCP110
Centriolar coiled-coil protein of 110 kDa isoform X2.
      
 0.528
ENSSCAP00000003167
annotation not available
   
 
  0.491
RAB7A
Ras-related protein Rab-7A.
   
 
  0.491
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.