STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TFDP1Transcription factor Dp-1 isoform X1. (412 aa)    
Predicted Functional Partners:
RB1
Retinoblastoma-associated protein.
   
 0.995
RBL2
Retinoblastoma-like protein 2.
   
 0.984
RBL1
Retinoblastoma-like protein 1 isoform X1.
   
 0.984
E2F1
E2F transcription factor 1.
   
 0.976
E2F4
Transcription factor E2F4 isoform X1.
   
 0.972
E2F3
Transcription factor E2F3 isoform X1.
   
 0.969
E2F2
Transcription factor E2F2 isoform X3.
   
 0.966
TFDP2
Transcription factor Dp-2 isoform X1.
  
 
 
0.951
E2F6
Transcription factor E2F6 isoform X1.
   
 0.939
SMAD3
Mothers against decapentaplegic homolog 3 isoform X1.
     
 0.930
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.