LONP2 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LONP2

Lon peptidase 2, peroxisomal. (824 aa)

Predicted Functional Partners:

TYSND1

0.842

CLPB

0.805

CLPX

0.796

LOC103825092

0.720

SAMM50

0.709

PEX5

0.701

ALDH18A1

0.696

HSPE1

0.656

PEX10

0.652

PEX5L

0.648

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH18A1	CLPB	ENSSCAP00000013427	ENSSCAP00000023143	Delta-1-pyrroline-5-carboxylate synthase isoform X1.	ATP-dependent Clp protease ATP-binding subunit ClpB.	0.711
ALDH18A1	CLPX	ENSSCAP00000013427	ENSSCAP00000013629	Delta-1-pyrroline-5-carboxylate synthase isoform X1.	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4.	0.711
ALDH18A1	HSPE1	ENSSCAP00000013427	ENSSCAP00000003393	Delta-1-pyrroline-5-carboxylate synthase isoform X1.	10 kDa heat shock protein, mitochondrial isoform X2.	0.734
ALDH18A1	LONP2	ENSSCAP00000013427	ENSSCAP00000005561	Delta-1-pyrroline-5-carboxylate synthase isoform X1.	Lon peptidase 2, peroxisomal.	0.696
CLPB	ALDH18A1	ENSSCAP00000023143	ENSSCAP00000013427	ATP-dependent Clp protease ATP-binding subunit ClpB.	Delta-1-pyrroline-5-carboxylate synthase isoform X1.	0.711
CLPB	CLPX	ENSSCAP00000023143	ENSSCAP00000013629	ATP-dependent Clp protease ATP-binding subunit ClpB.	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4.	0.747
CLPB	HSPE1	ENSSCAP00000023143	ENSSCAP00000003393	ATP-dependent Clp protease ATP-binding subunit ClpB.	10 kDa heat shock protein, mitochondrial isoform X2.	0.898
CLPB	LONP2	ENSSCAP00000023143	ENSSCAP00000005561	ATP-dependent Clp protease ATP-binding subunit ClpB.	Lon peptidase 2, peroxisomal.	0.805
CLPB	SAMM50	ENSSCAP00000023143	ENSSCAP00000011034	ATP-dependent Clp protease ATP-binding subunit ClpB.	Sorting and assembly machinery component 50 homolog.	0.475
CLPX	ALDH18A1	ENSSCAP00000013629	ENSSCAP00000013427	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4.	Delta-1-pyrroline-5-carboxylate synthase isoform X1.	0.711
CLPX	CLPB	ENSSCAP00000013629	ENSSCAP00000023143	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4.	ATP-dependent Clp protease ATP-binding subunit ClpB.	0.747
CLPX	HSPE1	ENSSCAP00000013629	ENSSCAP00000003393	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4.	10 kDa heat shock protein, mitochondrial isoform X2.	0.719
CLPX	LONP2	ENSSCAP00000013629	ENSSCAP00000005561	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4.	Lon peptidase 2, peroxisomal.	0.796
HSPE1	ALDH18A1	ENSSCAP00000003393	ENSSCAP00000013427	10 kDa heat shock protein, mitochondrial isoform X2.	Delta-1-pyrroline-5-carboxylate synthase isoform X1.	0.734
HSPE1	CLPB	ENSSCAP00000003393	ENSSCAP00000023143	10 kDa heat shock protein, mitochondrial isoform X2.	ATP-dependent Clp protease ATP-binding subunit ClpB.	0.898
HSPE1	CLPX	ENSSCAP00000003393	ENSSCAP00000013629	10 kDa heat shock protein, mitochondrial isoform X2.	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X4.	0.719
HSPE1	LOC103825092	ENSSCAP00000003393	ENSSCAP00000009894	10 kDa heat shock protein, mitochondrial isoform X2.	Mitochondrial import receptor subunit TOM40 homolog.	0.580
HSPE1	LONP2	ENSSCAP00000003393	ENSSCAP00000005561	10 kDa heat shock protein, mitochondrial isoform X2.	Lon peptidase 2, peroxisomal.	0.656
HSPE1	SAMM50	ENSSCAP00000003393	ENSSCAP00000011034	10 kDa heat shock protein, mitochondrial isoform X2.	Sorting and assembly machinery component 50 homolog.	0.420
LOC103825092	HSPE1	ENSSCAP00000009894	ENSSCAP00000003393	Mitochondrial import receptor subunit TOM40 homolog.	10 kDa heat shock protein, mitochondrial isoform X2.	0.580