STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH8Alkylated DNA repair protein alkB homolog 8. (674 aa)    
Predicted Functional Partners:
FTO
Alpha-ketoglutarate-dependent dioxygenase FTO isoform X3.
     
 0.770
TRMT112
Multifunctional methyltransferase subunit TRM112-like protein.
   
 
 0.749
ALKBH1
Alkylated DNA repair protein alkB homolog 1.
      
 0.572
ALKBH2
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
      
 0.540
BUD23
Probable 18S rRNA (guanine-N(7))-methyltransferase.
   
  
 0.539
ENSSCAP00000007947
annotation not available
      
 0.539
NHEJ1
Non-homologous end-joining factor 1 isoform X5.
      
 0.513
KBTBD3
Kelch repeat and BTB domain-containing protein 3.
      
 0.512
JMJD4
2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1.
   
  
 0.489
ELP2
Elongator acetyltransferase complex subunit 2.
      
 0.485
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.