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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BUD23Probable 18S rRNA (guanine-N(7))-methyltransferase. (378 aa)    
Predicted Functional Partners:
TRMT112
Multifunctional methyltransferase subunit TRM112-like protein.
   
 0.999
LTV1
Protein LTV1 homolog.
   
 0.969
BYSL
Bystin like.
   
 0.965
TSR1
Pre-rRNA-processing protein TSR1 homolog.
   
 0.965
TRMT11
TRNA (guanine(10)-N2)-methyltransferase homolog.
   
 0.951
RPS2
Small subunit ribosomal protein S2e.
    
 0.946
NOB1
RNA-binding protein NOB1.
   
 0.941
TRMT61A
TRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A isoform X1.
  
 0.939
RPS13
Small subunit ribosomal protein S13e.
    
  0.938
RPS23
Small subunit ribosomal protein S23e.
   
  0.936
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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