STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2. (296 aa)    
Predicted Functional Partners:
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
    
 0.998
CDC5L
Cell division cycle 5-like protein.
   
 0.998
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.997
SNRNP200
LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.997
PRPF19
Pre-mRNA-processing factor 19.
    
 0.995
CWC22
Pre-mRNA-splicing factor CWC22 homolog.
    
 0.984
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.983
SF3B3
Splicing factor 3B subunit 3.
    
 0.983
CWC15
Spliceosome-associated protein CWC15 homolog.
    
 0.979
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.979
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.