STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000005825annotation not available (139 aa)    
Predicted Functional Partners:
CD9
CD9 antigen isoform X2.
    
 
 0.724
PTGFRN
Prostaglandin F2 receptor negative regulator.
    
 
 0.718
TSPAN9
Tetraspanin-9 isoform X1.
    
 
 0.526
CLDN1
Claudin-1.
      
 0.513
ENSSCAP00000005649
annotation not available
    
  0.498
ENSSCAP00000005681
annotation not available
    
  0.498
TSPAN4
Tetraspanin-4 isoform X1.
    
 
 0.489
TSG101
Tumor susceptibility gene 101 protein isoform X1.
      
 0.481
LAMP1
Lysosome-associated membrane glycoprotein 1.
   
 0.433
SCARB1
Scavenger receptor class B member 1 isoform X3.
   
 
 0.410
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.