STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE2L3Ubiquitin-conjugating enzyme E2 L3. (159 aa)    
Predicted Functional Partners:
LOC103825092
Mitochondrial import receptor subunit TOM40 homolog.
   
 
 0.716
SAMM50
Sorting and assembly machinery component 50 homolog.
     
 0.678
TSTA3
GDP-L-fucose synthase.
 
 
  
 0.622
TOMM20
LOW QUALITY PROTEIN: mitochondrial import receptor subunit TOM20 homolog.
   
 
 0.602
TOMM70
LOW QUALITY PROTEIN: mitochondrial import receptor subunit TOM70.
    
 0.572
SLC25A32
Solute carrier family 25 (mitochondrial folate transporter), member 32.
    
  0.536
CFAP70
Cilia and flagella associated protein 70.
   
 0.511
RHOT2
Ras homolog family member T2.
   
 0.511
RHOT1
Ras homolog family member T1.
   
 0.511
MTX3
Metaxin-3 isoform X1.
    
 0.481
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.