STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB7ARas-related protein Rab-7A. (207 aa)    
Predicted Functional Partners:
TBC1D15
TBC1 domain family member 15.
    
 0.964
RAB7B
Ras-related protein Rab-7B.
  
 
0.961
FYCO1
FYVE and coiled-coil domain-containing protein 1 isoform X2.
    
 0.945
DYNC1LI1
Cytoplasmic dynein 1 light intermediate chain 1.
   
 0.879
DYNC1LI2
Cytoplasmic dynein 1 light intermediate chain 2.
   
 0.875
CHM
Rab proteins geranylgeranyltransferase component A 1.
    
 0.870
DYNC1H1
Cytoplasmic dynein 1 heavy chain 1.
    
 0.835
DYNC2H1
Cytoplasmic dynein 2 heavy chain 1.
    
 0.822
DYNC1I1
Cytoplasmic dynein 1 intermediate chain 1.
     
  0.813
DYNC1I2
Cytoplasmic dynein 1 intermediate chain 2 isoform X1.
     
  0.813
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.