STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC61A1Protein transport protein SEC61 subunit alpha. (476 aa)    
Predicted Functional Partners:
SEC63
Translocation protein SEC63 homolog.
   
 0.998
SEC61B
Protein transport protein SEC61 subunit beta.
   
 0.995
SEC61G
Protein transport protein SEC61 subunit gamma and related proteins.
   
 0.994
ENSSCAP00000002922
annotation not available
    
 
 0.987
RPL5
Ribosomal protein L5.
 
 
 0.979
RPS15
Small subunit ribosomal protein S15e.
 
 
 0.975
RPL11
Large subunit ribosomal protein L11e.
  
 
 0.974
RPL23
Large subunit ribosomal protein L23e.
  
 
 0.974
MRPL13
39S ribosomal protein L13, mitochondrial.
  
 
 0.972
RPL23A
Large subunit ribosomal protein L23Ae.
  
 
 0.972
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.