STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC61A1Protein transport protein SEC61 subunit alpha. (476 aa)    
Predicted Functional Partners:
SEC61B
Protein transport protein SEC61 subunit beta.
   
 0.992
SEC61G
Protein transport protein SEC61 subunit gamma and related proteins.
   
 0.991
SEC63
Translocation protein SEC63 homolog.
   
 
 0.974
RPL11
Large subunit ribosomal protein L11e.
  
 
 0.953
RPL23
Large subunit ribosomal protein L23e.
  
 
 0.953
RPL23A
Large subunit ribosomal protein L23Ae.
  
 
 0.945
RPL8
Ribosomal protein L8.
  
 
 0.933
RPL26L1
Large subunit ribosomal protein L26e.
  
 
 0.933
SSR3
LOW QUALITY PROTEIN: translocon-associated protein subunit gamma.
   
 0.927
RPS11
Small subunit ribosomal protein S11e.
  
 
 0.926
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.