STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARVCFArmadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1. (966 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
    
 0.839
CDH5
Cadherin 5, type 2, VE-cadherin.
    
 0.774
JUP
Junction plakoglobin.
   
0.744
CDH17
Cadherin 17, LI cadherin.
    
 0.710
ZBTB33
Zinc finger and BTB domain-containing protein 33.
    
 
 0.673
CDH15
Cadherin 15.
    
 0.656
CDH2
Cadherin 2, type 1, N-cadherin.
    
 0.656
CDH4
LOW QUALITY PROTEIN: cadherin-4.
    
 0.656
ENSSCAP00000011106
annotation not available
    
 0.649
CDH1
Cadherin 1.
    
 0.649
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.