STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMXL2LOW QUALITY PROTEIN: dmX-like protein 2. (2958 aa)    
Predicted Functional Partners:
ROGDI
Protein rogdi homolog isoform X1.
    
 0.949
SKP1
S-phase kinase-associated protein 1.
    
 0.876
ATP6V1B1
ATPase H+ transporting V1 subunit B1.
    
 
 0.785
DMXL1
DmX-like protein 1 isoform X1.
  
  
 
0.701
ATP6V1E1
V-type H+-transporting ATPase subunit E.
    
 
 0.684
RAB3GAP1
Rab3 GTPase-activating protein catalytic subunit isoform X1.
   
 
 0.624
WDR72
WD repeat domain 72.
   
 0.564
WDR7
WD repeat-containing protein 7 isoform X1.
   
 0.564
ATP6V1C2
ATPase H+ transporting V1 subunit C2.
    
 
 0.564
RAB3GAP2
Rab3 GTPase-activating protein non-catalytic subunit.
   
  
 0.547
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.