Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL5039S ribosomal protein L50, mitochondrial isoform X1. (137 aa)    
Predicted Functional Partners:
MRPL2
39S ribosomal protein L2, mitochondrial.
    
 0.981
MRPL51
39S ribosomal protein L51, mitochondrial.
   
 
 0.980
MRPL47
39S ribosomal protein L47, mitochondrial.
   
 0.976
MRPL42
39S ribosomal protein L42, mitochondrial.
   
 0.970
MRPL32
39S ribosomal protein L32, mitochondrial.
   
  0.970
MRPL20
39S ribosomal protein L20, mitochondrial.
   
 0.970
MRPL58
Peptidyl-tRNA hydrolase ICT1, mitochondrial.
   
 0.969
MRPL28
Mitochondrial ribosomal protein L28.
   
 0.967
MRPL44
LOW QUALITY PROTEIN: 39S ribosomal protein L44, mitochondrial.
   
 0.967
MRPL19
39S ribosomal protein L19, mitochondrial.
   
  0.966
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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