Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA6DSemaphorin-6D isoform X1. (1088 aa)    
Predicted Functional Partners:
NRP1
Neuropilin-1 isoform X1.
    
 0.726
TREM2
LOW QUALITY PROTEIN: triggering receptor expressed on myeloid cells 2-like.
     
 0.715
TMEM38B
Trimeric intracellular cation channel type B isoform X1.
      
 0.694
PLXND1
Plexin D1.
    
 0.648
SAP18
Histone deacetylase complex subunit SAP18.
      
 0.613
CCNB3
G2/mitotic-specific cyclin-B3 isoform X1.
      
 0.597
GOLIM4
Golgi integral membrane protein 4 isoform X1.
      
 0.580
PLXNA1
Plexin-A1.
    
0.559
PLXNC1
LOW QUALITY PROTEIN: plexin-C1.
    
 0.535
SLIT1
Slit homolog 1 protein.
      
 0.529
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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