Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NUP188Nuclear pore complex protein Nup188. (1769 aa)    
Predicted Functional Partners:
NUP93
Nuclear pore complex protein Nup93 isoform X3.
   
 0.997
NUP155
Nuclear pore complex protein Nup155.
   
 0.997
NUP205
Nuclear pore complex protein Nup205.
   
 0.995
NUP85
Nuclear pore complex protein Nup85.
   
 0.990
NUP88
Nuclear pore complex protein Nup88.
   
 0.990
NDC1
Nucleoporin NDC1 isoform X2.
   
 0.990
NUP43
Nucleoporin 43.
    
 0.986
NUP35
Nuclear pore complex protein Nup53.
    
 0.984
NUP210
Nuclear pore membrane glycoprotein 210 isoform X1.
   
 0.983
NUP133
Nuclear pore complex protein Nup133.
   
 0.981
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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