Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HPCANeuron-specific calcium-binding protein hippocalcin. (193 aa)    
Predicted Functional Partners:
KCNF1
Potassium voltage-gated channel subfamily F member 1.
   
 0.631
PI4KB
LOW QUALITY PROTEIN: phosphatidylinositol 4-kinase beta.
    
 
 0.583
CALM1
Calmodulin 1.
   
 0.537
CALM2
Calmodulin-2.
   
 0.537
CALML3
Calmodulin, striated muscle.
   
 0.537
ENSSCAP00000002874
annotation not available
    
 0.480
DLG2
Disks large homolog 2 isoform X1.
    
 0.480
DLG1
Disks large homolog 1 isoform X14.
    
 0.480
DLG3
Discs large MAGUK scaffold protein 3.
    
 0.480
POLR3D
DNA-directed RNA polymerase III subunit RPC4 isoform X1.
    
 
 0.478
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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