NECAB2 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NECAB2

N-terminal EF-hand calcium-binding protein 2 isoform X1. (258 aa)

Predicted Functional Partners:

GAD2

0.526

LRIT1

0.488

ADORA2A

0.476

ADORA2B

0.476

HTR1B

0.461

MANSC4

0.451

SEMA6A

0.428

SCN3B

0.414

SV2B

0.412

FEZF2

0.410

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADORA2A	ADORA2B	ENSSCAP00000004506	ENSSCAP00000012758	Adenosine receptor A2a.	Adenosine receptor A2b.	0.907
ADORA2A	NECAB2	ENSSCAP00000004506	ENSSCAP00000006535	Adenosine receptor A2a.	N-terminal EF-hand calcium-binding protein 2 isoform X1.	0.476
ADORA2B	ADORA2A	ENSSCAP00000012758	ENSSCAP00000004506	Adenosine receptor A2b.	Adenosine receptor A2a.	0.907
ADORA2B	NECAB2	ENSSCAP00000012758	ENSSCAP00000006535	Adenosine receptor A2b.	N-terminal EF-hand calcium-binding protein 2 isoform X1.	0.476
FEZF2	NECAB2	ENSSCAP00000008154	ENSSCAP00000006535	LOW QUALITY PROTEIN: fez family zinc finger protein 2.	N-terminal EF-hand calcium-binding protein 2 isoform X1.	0.410
FEZF2	SCN3B	ENSSCAP00000008154	ENSSCAP00000014684	LOW QUALITY PROTEIN: fez family zinc finger protein 2.	Voltage-gated sodium channel type III beta.	0.409
GAD2	NECAB2	ENSSCAP00000013253	ENSSCAP00000006535	Glutamate decarboxylase 2.	N-terminal EF-hand calcium-binding protein 2 isoform X1.	0.526
HTR1B	NECAB2	ENSSCAP00000008342	ENSSCAP00000006535	LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 1B.	N-terminal EF-hand calcium-binding protein 2 isoform X1.	0.461
LRIT1	MANSC4	ENSSCAP00000003802	ENSSCAP00000014223	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	MANSC domain containing 4.	0.698
LRIT1	NECAB2	ENSSCAP00000003802	ENSSCAP00000006535	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	N-terminal EF-hand calcium-binding protein 2 isoform X1.	0.488
MANSC4	LRIT1	ENSSCAP00000014223	ENSSCAP00000003802	MANSC domain containing 4.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.698
MANSC4	NECAB2	ENSSCAP00000014223	ENSSCAP00000006535	MANSC domain containing 4.	N-terminal EF-hand calcium-binding protein 2 isoform X1.	0.451
NECAB2	ADORA2A	ENSSCAP00000006535	ENSSCAP00000004506	N-terminal EF-hand calcium-binding protein 2 isoform X1.	Adenosine receptor A2a.	0.476
NECAB2	ADORA2B	ENSSCAP00000006535	ENSSCAP00000012758	N-terminal EF-hand calcium-binding protein 2 isoform X1.	Adenosine receptor A2b.	0.476
NECAB2	FEZF2	ENSSCAP00000006535	ENSSCAP00000008154	N-terminal EF-hand calcium-binding protein 2 isoform X1.	LOW QUALITY PROTEIN: fez family zinc finger protein 2.	0.410
NECAB2	GAD2	ENSSCAP00000006535	ENSSCAP00000013253	N-terminal EF-hand calcium-binding protein 2 isoform X1.	Glutamate decarboxylase 2.	0.526
NECAB2	HTR1B	ENSSCAP00000006535	ENSSCAP00000008342	N-terminal EF-hand calcium-binding protein 2 isoform X1.	LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 1B.	0.461
NECAB2	LRIT1	ENSSCAP00000006535	ENSSCAP00000003802	N-terminal EF-hand calcium-binding protein 2 isoform X1.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.488
NECAB2	MANSC4	ENSSCAP00000006535	ENSSCAP00000014223	N-terminal EF-hand calcium-binding protein 2 isoform X1.	MANSC domain containing 4.	0.451
NECAB2	SCN3B	ENSSCAP00000006535	ENSSCAP00000014684	N-terminal EF-hand calcium-binding protein 2 isoform X1.	Voltage-gated sodium channel type III beta.	0.414