Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL4A1Collagen alpha-1(IV) chain. (1669 aa)    
Predicted Functional Partners:
ITGA2
Integrin alpha 2.
    
 0.932
ITGA1
Integrin alpha 1.
    
 0.931
ITGA11
Integrin alpha 11.
    
 0.931
ITGAV
Integrin alpha V.
    
 0.924
ITGB1
Integrin beta-1 isoform X1.
    
 0.922
ITGA3
Integrin subunit alpha 3.
    
 0.919
ITGA9
Integrin alpha 9.
    
 0.915
ITGB8
Integrin beta-8 isoform X1.
    
  0.908
SDC4
Syndecan 4.
    
  0.901
CD44
CD44 antigen isoform X1.
    
  0.900
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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