STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000006798Collagen alpha-2(VI) chain-like. (205 aa)    
Predicted Functional Partners:
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.474
FBN1
LOW QUALITY PROTEIN: fibrillin-1.
   
 0.458
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
   
 0.456
PPIB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
   
 
 0.454
ENSSCAP00000022608
annotation not available
   
 0.454
SERPINH1
Serpin peptidase inhibitor, clade H, member 1.
   
 0.448
LAMB1
Laminin subunit beta-1.
   
 0.442
CERCAM
Inactive glycosyltransferase 25 family member 3 isoform X2.
   
 0.421
COLGALT2
Collagen beta-1,O-galactosyltransferase.
   
 0.421
FBLN1
Fibulin 1.
   
 0.418
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.