Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMO1Rhombotin-1. (145 aa)    
Predicted Functional Partners:
LDB2
LIM domain-binding protein 2 isoform X1.
    
 0.829
LDB1
LIM domain-binding protein 1 isoform X1.
    
 0.829
GATA3
Trans-acting T-cell-specific transcription factor GATA-3 isoform X1.
    
 0.624
LHX9
LIM/homeobox protein Lhx9 isoform X2.
   
 
 0.603
LHX2
LIM/homeobox protein Lhx2 isoform X2.
   
 
 0.603
GATA2
Endothelial transcription factor GATA-2.
    
 0.579
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.568
SSBP2
Single-stranded DNA-binding protein 2 isoform X1.
    
 
 0.568
MFNG
Beta-1,3-N-acetylglucosaminyltransferase manic fringe isoform X4.
    
 
 0.558
LFNG
LOW QUALITY PROTEIN: beta-1,3-N-acetylglucosaminyltransferase lunatic fringe.
    
 
 0.558
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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