STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBX1E3 ubiquitin-protein ligase RBX1. (119 aa)    
Predicted Functional Partners:
CUL3
Cullin 3.
    
 0.999
SKP2
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2).
    
 0.999
SKP1
S-phase kinase-associated protein 1.
   
 0.999
CUL1
Cullin-1 isoform X1.
    
 0.999
CUL5
Cullin 5.
    
 0.996
DDB1
DNA damage-binding protein 1.
    
 0.996
ELOC
Elongin-C.
   
 0.995
BTRC
F-box/WD repeat-containing protein 1A isoform X1.
    
 0.994
DCAF1
DDB1- and CUL4-associated factor 1.
    
 0.987
ENSSCAP00000022102
Von Hippel-Lindau disease tumor suppressor-like.
    
 0.985
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.