STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARS1Alanine--tRNA ligase, cytoplasmic. (968 aa)    
Predicted Functional Partners:
CDC16
Cell division cycle protein 16 homolog.
   
 0.916
ANAPC4
Anaphase-promoting complex subunit 4.
   
 0.914
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 0.914
ANAPC5
Anaphase-promoting complex subunit 5.
   
 0.911
ANAPC1
Anaphase-promoting complex subunit 1.
   
 0.911
ANAPC2
Anaphase-promoting complex subunit 2.
    
 0.907
AARS2
Alanine--tRNA ligase, mitochondrial.
  
  
 
0.903
FAM89A
Family with sequence similarity 89 member A.
    
 0.902
EPRS1
Bifunctional glutamate/proline--tRNA ligase isoform X3.
  
 
 0.884
ANAPC7
Anaphase-promoting complex subunit 7.
   
 0.882
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.