STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIX6Homeobox protein SIX3/6. (234 aa)    
Predicted Functional Partners:
VAX2
Ventral anterior homeobox 2.
   
 
 0.551
EYA1
EYA transcriptional coactivator and phosphatase 1.
   
 0.512
EYA4
EYA transcriptional coactivator and phosphatase 4.
   
 0.512
EYA2
Eyes absent homolog 2 isoform X1.
   
 0.512
EYA3
Eyes absent homolog 3 isoform X1.
   
 0.512
CNGA3
Cyclic nucleotide gated channel subunit alpha 3.
      
 0.494
DLX1
Homeobox protein DLX1/4/6.
   
  
 0.478
POU4F2
LOW QUALITY PROTEIN: POU domain, class 4, transcription factor 2.
  
  
 0.477
VSX2
Visual system homeobox 2.
   
  
 0.457
DNMBP
Dynamin-binding protein isoform X1.
      
 0.440
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.