STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGCS23-hydroxy-3-methylglutaryl-CoA synthase 2. (475 aa)    
Predicted Functional Partners:
HMGCR
3-hydroxy-3-methylglutaryl-Coenzyme A reductase.
  
 
 0.997
ACAT1
Acetyl-CoA acetyltransferase, mitochondrial isoform X2.
  
 0.990
HADHB
Trifunctional enzyme subunit beta, mitochondrial.
  
 0.989
ACAT2
Acetyl-CoA acetyltransferase, cytosolic.
  
 0.986
ACAA2
3-ketoacyl-CoA thiolase, mitochondrial.
  
 0.977
ACAA1
LOW QUALITY PROTEIN: 3-ketoacyl-CoA thiolase, peroxisomal.
  
 0.973
HMGCL
Hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X2.
     
 0.971
HMGCLL1
3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic.
     
 0.965
EHHADH
Enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3,2-trans-enoyl-CoA isomerase.
  
 
 0.956
OXCT1
Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial.
    
 0.952
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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