Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSME3IP1PSME3-interacting protein isoform X1. (255 aa)    
Predicted Functional Partners:
PSME3
Proteasome activator complex subunit 3 isoform X1.
    
 
 0.923
PSMA1
Proteasome subunit alpha type-1.
   
   0.836
GSC
LOW QUALITY PROTEIN: homeobox protein goosecoid.
    
   0.833
RSRP1
Arginine and serine rich protein 1.
    
   0.827
CACTIN
Cactin.
    
 
 0.801
CDC5L
Cell division cycle 5-like protein.
   
   0.753
ENSSCAP00000001530
annotation not available
   
   0.745
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
   0.738
COG4
Conserved oligomeric Golgi complex subunit 4 isoform X1.
   
  
 0.715
ENSSCAP00000003295
annotation not available
    
 
 0.711
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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