STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRF1Transcription factor IIIB 90 kDa subunit. (149 aa)    
Predicted Functional Partners:
BDP1
Transcription factor TFIIIB component B'' homolog isoform X1.
    
 0.903
GTF3C3
General transcription factor 3C polypeptide 3 (transcription factor C subunit 4).
    
 0.902
ENSSCAP00000008054
annotation not available
 
   
  0.896
ENSSCAP00000008034
annotation not available
 
   
  0.892
POLR3F
DNA-directed RNA polymerase III subunit RPC6.
    
 0.890
POLR3B
DNA-directed RNA polymerase III subunit RPC2.
   
 0.869
POLR3A
DNA-directed RNA polymerase III subunit RPC1.
   
 0.858
POLR1C
LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1.
    
 0.835
TBPL2
Transcription initiation factor TFIID TATA-box-binding protein.
   
 0.820
TBP
Transcription initiation factor TFIID TATA-box-binding protein.
   
 0.820
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.