Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF1Protein YIPF1 isoform X1. (306 aa)    
Predicted Functional Partners:
YIPF6
Protein YIPF6.
   
 
 0.947
YIPF4
Protein YIPF4.
   
 
 0.858
YIPF7
Protein YIPF5/7.
   
 
 0.820
YIPF5
Protein YIPF5/7.
   
 
 0.756
YIPF3
Protein YIPF3.
   
  
 0.741
YIF1B
Protein transport protein YIF1.
   
  
 0.721
SELENOS
Selenoprotein S.
   
 
 0.719
LOC103819904
Golgi apparatus membrane protein TVP23 homolog B-like isoform X2.
   
 
 0.715
TVP23A
Golgi apparatus membrane protein TVP23 homolog A isoform X1.
   
 
 0.715
FBXO32
LOW QUALITY PROTEIN: F-box only protein 32.
      
 0.600
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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