Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC42Leucine-rich repeat-containing protein 42. (476 aa)    
Predicted Functional Partners:
RPL36AL
Large subunit ribosomal protein L44e.
      
 0.691
SMIM15
Small integral membrane protein 15.
      
 0.685
TCEANC2
Transcription elongation factor A N-terminal and central domain-containing protein 2.
      
 0.682
DCAF5
DDB1- and CUL4-associated factor 5 isoform X1.
      
 0.682
EXD2
Exonuclease 3'-5' domain-containing protein 2 isoform X1.
      
 0.642
RIC8B
Synembryn-B isoform X1.
      
 0.613
FANCB
Fanconi anemia group B protein.
      
 0.606
IQCB1
IQ calmodulin-binding motif-containing protein 1 isoform X1.
      
 0.605
FBXO47
F-box only protein 47.
      
 0.601
MPLKIP
LOW QUALITY PROTEIN: M-phase-specific PLK1-interacting protein.
      
 0.572
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.