Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLBA1Uncharacterized protein CLBA1. (337 aa)    
Predicted Functional Partners:
AFTPH
Aftiphilin isoform X1.
     
0.782
LRWD1
Leucine-rich repeat and WD repeat-containing protein 1.
      
 0.699
TICRR
LOW QUALITY PROTEIN: treslin.
      
 0.689
KIF9
Kinesin family member 9.
      
 0.688
LRATD2
Protein FAM84B.
      
 0.688
FAAP24
Fanconi anemia core complex-associated protein 24.
      
 0.604
CRIP2
Cysteine-rich protein 2 isoform X1.
      
 0.596
SYNRG
Synergin gamma isoform X1.
     
 0.580
ANKEF1
Ankyrin repeat and EF-hand domain-containing protein 1 isoform X2.
      
 0.566
ODF1
Outer dense fiber protein 1.
      
 0.544
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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