Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KDM5B[histone H3]-trimethyl-L-lysine4 demethylase. (1528 aa)    
Predicted Functional Partners:
PAX9
Paired box protein Pax-9.
    
 
 0.828
RB1
Retinoblastoma-associated protein.
    
 
 0.828
ATP5PO
F-type H+-transporting ATPase subunit O.
  
 0.809
ATP5F1D
F-type H+-transporting ATPase subunit delta.
  
 0.809
ATP5F1C
F-type H+-transporting ATPase subunit gamma.
  
 0.809
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.
    
 0.748
SETD1B
SET domain containing 1B, histone lysine methyltransferase.
   
 0.745
EED
Polycomb protein EED.
   
 0.744
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
    
 0.731
LOC103824915
F-type H+-transporting ATPase subunit alpha.
  
 0.721
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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