CIRBP protein (Serinus canaria) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

CIRBP

Cold-inducible RNA-binding protein isoform X1. (171 aa)

Predicted Functional Partners:

LOC103823413

0.850

HNRNPK

0.850

ELAVL1

0.789

KHDRBS1

0.732

ENSSCAP00000001280

0.723

RBMX

0.715

SNRPA1

0.685

PRPF8

0.670

SNRPB2

0.670

SNRPA

0.670

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

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structured XML interaction data, according to the 'PSI-MI' data standard

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... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIRBP	ELAVL1	ENSSCAP00000008367	ENSSCAP00000001136	Cold-inducible RNA-binding protein isoform X1.	ELAV like RNA binding protein 1.	0.789
CIRBP	ENSSCAP00000001280	ENSSCAP00000008367	ENSSCAP00000001280	Cold-inducible RNA-binding protein isoform X1.	annotation not available	0.723
CIRBP	HNRNPK	ENSSCAP00000008367	ENSSCAP00000005760	Cold-inducible RNA-binding protein isoform X1.	Heterogeneous nuclear ribonucleoprotein K isoform X1.	0.850
CIRBP	KHDRBS1	ENSSCAP00000008367	ENSSCAP00000006302	Cold-inducible RNA-binding protein isoform X1.	KH domain-containing, RNA-binding, signal transduction-associated protein 1.	0.732
CIRBP	LOC103823413	ENSSCAP00000008367	ENSSCAP00000005195	Cold-inducible RNA-binding protein isoform X1.	Heterogeneous nuclear ribonucleoprotein K-like isoform X2.	0.850
CIRBP	PRPF8	ENSSCAP00000008367	ENSSCAP00000009307	Cold-inducible RNA-binding protein isoform X1.	Pre-mRNA-processing-splicing factor 8.	0.670
CIRBP	RBMX	ENSSCAP00000008367	ENSSCAP00000004355	Cold-inducible RNA-binding protein isoform X1.	RNA binding motif protein X-linked.	0.715
CIRBP	SNRPA	ENSSCAP00000008367	ENSSCAP00000014690	Cold-inducible RNA-binding protein isoform X1.	U1 small nuclear ribonucleoprotein A.	0.670
CIRBP	SNRPA1	ENSSCAP00000008367	ENSSCAP00000012840	Cold-inducible RNA-binding protein isoform X1.	U2 small nuclear ribonucleoprotein A.	0.685
CIRBP	SNRPB2	ENSSCAP00000008367	ENSSCAP00000010071	Cold-inducible RNA-binding protein isoform X1.	U2 small nuclear ribonucleoprotein B'.	0.670
ELAVL1	CIRBP	ENSSCAP00000001136	ENSSCAP00000008367	ELAV like RNA binding protein 1.	Cold-inducible RNA-binding protein isoform X1.	0.789
ELAVL1	ENSSCAP00000001280	ENSSCAP00000001136	ENSSCAP00000001280	ELAV like RNA binding protein 1.	annotation not available	0.892
ELAVL1	HNRNPK	ENSSCAP00000001136	ENSSCAP00000005760	ELAV like RNA binding protein 1.	Heterogeneous nuclear ribonucleoprotein K isoform X1.	0.859
ELAVL1	KHDRBS1	ENSSCAP00000001136	ENSSCAP00000006302	ELAV like RNA binding protein 1.	KH domain-containing, RNA-binding, signal transduction-associated protein 1.	0.507
ELAVL1	LOC103823413	ENSSCAP00000001136	ENSSCAP00000005195	ELAV like RNA binding protein 1.	Heterogeneous nuclear ribonucleoprotein K-like isoform X2.	0.859
ELAVL1	RBMX	ENSSCAP00000001136	ENSSCAP00000004355	ELAV like RNA binding protein 1.	RNA binding motif protein X-linked.	0.490
ENSSCAP00000001280	CIRBP	ENSSCAP00000001280	ENSSCAP00000008367	annotation not available	Cold-inducible RNA-binding protein isoform X1.	0.723
ENSSCAP00000001280	ELAVL1	ENSSCAP00000001280	ENSSCAP00000001136	annotation not available	ELAV like RNA binding protein 1.	0.892
ENSSCAP00000001280	HNRNPK	ENSSCAP00000001280	ENSSCAP00000005760	annotation not available	Heterogeneous nuclear ribonucleoprotein K isoform X1.	0.913
ENSSCAP00000001280	KHDRBS1	ENSSCAP00000001280	ENSSCAP00000006302	annotation not available	KH domain-containing, RNA-binding, signal transduction-associated protein 1.	0.927