LOC103813332-2 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103813332-2

Histone H2B 1/2/3/4/6. (126 aa)

Predicted Functional Partners:

LEO1

0.819

KDM6A

0.753

ENSSCAP00000008401

0.709

ENSSCAP00000008417

0.706

LOC103813338

0.702

LOC103813338-2

0.702

LOC115485216

0.701

LOC103813361

0.701

LOC103813346

0.700

ENSSCAP00000023967

0.700

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSCAP00000008401	KDM6A	ENSSCAP00000008401	ENSSCAP00000015551	annotation not available	Lysine-specific demethylase 6A isoform X3.	0.704
ENSSCAP00000008401	LEO1	ENSSCAP00000008401	ENSSCAP00000006160	annotation not available	RNA polymerase-associated protein LEO1 isoform X1.	0.550
ENSSCAP00000008401	LOC103813332-2	ENSSCAP00000008401	ENSSCAP00000008412	annotation not available	Histone H2B 1/2/3/4/6.	0.709
ENSSCAP00000008417	KDM6A	ENSSCAP00000008417	ENSSCAP00000015551	annotation not available	Lysine-specific demethylase 6A isoform X3.	0.704
ENSSCAP00000008417	LEO1	ENSSCAP00000008417	ENSSCAP00000006160	annotation not available	RNA polymerase-associated protein LEO1 isoform X1.	0.550
ENSSCAP00000008417	LOC103813332-2	ENSSCAP00000008417	ENSSCAP00000008412	annotation not available	Histone H2B 1/2/3/4/6.	0.706
ENSSCAP00000023967	KDM6A	ENSSCAP00000023967	ENSSCAP00000015551	Histone H2A.	Lysine-specific demethylase 6A isoform X3.	0.704
ENSSCAP00000023967	LEO1	ENSSCAP00000023967	ENSSCAP00000006160	Histone H2A.	RNA polymerase-associated protein LEO1 isoform X1.	0.550
ENSSCAP00000023967	LOC103813332-2	ENSSCAP00000023967	ENSSCAP00000008412	Histone H2A.	Histone H2B 1/2/3/4/6.	0.700
KDM6A	ENSSCAP00000008401	ENSSCAP00000015551	ENSSCAP00000008401	Lysine-specific demethylase 6A isoform X3.	annotation not available	0.704
KDM6A	ENSSCAP00000008417	ENSSCAP00000015551	ENSSCAP00000008417	Lysine-specific demethylase 6A isoform X3.	annotation not available	0.704
KDM6A	ENSSCAP00000023967	ENSSCAP00000015551	ENSSCAP00000023967	Lysine-specific demethylase 6A isoform X3.	Histone H2A.	0.704
KDM6A	LEO1	ENSSCAP00000015551	ENSSCAP00000006160	Lysine-specific demethylase 6A isoform X3.	RNA polymerase-associated protein LEO1 isoform X1.	0.935
KDM6A	LOC103813332-2	ENSSCAP00000015551	ENSSCAP00000008412	Lysine-specific demethylase 6A isoform X3.	Histone H2B 1/2/3/4/6.	0.753
KDM6A	LOC103813338	ENSSCAP00000015551	ENSSCAP00000008489	Lysine-specific demethylase 6A isoform X3.	Histone H2A-IV.	0.704
KDM6A	LOC103813338-2	ENSSCAP00000015551	ENSSCAP00000011991	Lysine-specific demethylase 6A isoform X3.	Histone H2A-IV.	0.704
KDM6A	LOC103813346	ENSSCAP00000015551	ENSSCAP00000008460	Lysine-specific demethylase 6A isoform X3.	Histone H2A.J.	0.704
KDM6A	LOC103813361	ENSSCAP00000015551	ENSSCAP00000008519	Lysine-specific demethylase 6A isoform X3.	Histone H2A.	0.704
KDM6A	LOC115485216	ENSSCAP00000015551	ENSSCAP00000008394	Lysine-specific demethylase 6A isoform X3.	Histone H2A-like.	0.704
LEO1	ENSSCAP00000008401	ENSSCAP00000006160	ENSSCAP00000008401	RNA polymerase-associated protein LEO1 isoform X1.	annotation not available	0.550