STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGFLAMPikachurin isoform X1. (962 aa)    
Predicted Functional Partners:
DAG1
Dystroglycan 1.
   
 0.987
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.934
SDC1
Syndecan 1.
     
 0.858
LRIT3
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.
    
 0.794
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2 isoform X2.
    
 0.714
NID2
Nidogen 2.
   
 0.698
NID1
Nidogen (entactin).
   
 0.698
SORL1
Sortilin-related receptor isoform X1.
    
 0.687
EGF
Pro-epidermal growth factor isoform X1.
    
 0.685
LRIT1
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.
    
 0.674
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.