STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO47037.1DNA processing protein. (393 aa)    
Predicted Functional Partners:
SDO47751.1
comF family protein.
 
 
 0.920
SDP62091.1
Competence protein ComEC.
 
  
 0.918
SDP05387.1
Mg chelatase-related protein.
 
 0.911
SDP16712.1
Magnesium chelatase family protein.
 
 
 0.840
SDO89935.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.818
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
 
 0.718
SDO47071.1
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.705
SDP36317.1
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.703
SDO80011.1
Putative endonuclease; Belongs to the UPF0102 family.
 
    0.699
SDP04277.1
Single-strand binding protein.
 
  
 0.697
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.