STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO47751.1comF family protein. (246 aa)    
Predicted Functional Partners:
SDP62091.1
Competence protein ComEC.
 
  
 0.938
SDO47037.1
DNA processing protein.
 
 
 0.920
SDP36317.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.881
SDP15485.1
Signal transduction histidine kinase.
  
  
 0.817
SDP16881.1
Prephenate dehydratase.
  
  
 0.805
SDP16712.1
Magnesium chelatase family protein.
 
  
 0.791
SDP05387.1
Mg chelatase-related protein.
 
  
 0.752
SDP58555.1
Lipopolysaccharide transport system ATP-binding protein.
   
    0.744
SDO80011.1
Putative endonuclease; Belongs to the UPF0102 family.
 
    0.703
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
    0.695
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.