SDO54784.1 protein (Desulforhopalus singaporensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDO54784.1

Formate C-acetyltransferase. (808 aa)

Predicted Functional Partners:

SDO54910.1

0.953

SDO54814.1

0.952

SDO71342.1

0.886

SDP12136.1

0.885

SDP30667.1

0.884

SDO66046.1

0.866

SDP72857.1

0.866

SDP65822.1

0.857

SDP67751.1

0.841

SDP83930.1

0.761

Your Current Organism:

Desulforhopalus singaporensis

NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDO54784.1	SDO54814.1	SAMN05660330_00485	SAMN05660330_00486	Formate C-acetyltransferase.	Pyruvate formate lyase activating enzyme.	0.952
SDO54784.1	SDO54910.1	SAMN05660330_00485	SAMN05660330_00489	Formate C-acetyltransferase.	Pyruvate formate lyase activating enzyme.	0.953
SDO54784.1	SDO66046.1	SAMN05660330_00485	SAMN05660330_00756	Formate C-acetyltransferase.	Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.866
SDO54784.1	SDO71342.1	SAMN05660330_00485	SAMN05660330_00843	Formate C-acetyltransferase.	Pyruvate formate lyase activating enzyme.	0.886
SDO54784.1	SDP12136.1	SAMN05660330_00485	SAMN05660330_01839	Formate C-acetyltransferase.	Pyruvate formate lyase activating enzyme.	0.885
SDO54784.1	SDP30667.1	SAMN05660330_00485	SAMN05660330_02376	Formate C-acetyltransferase.	Pyruvate formate lyase activating enzyme.	0.884
SDO54784.1	SDP65822.1	SAMN05660330_00485	SAMN05660330_03575	Formate C-acetyltransferase.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.857
SDO54784.1	SDP67751.1	SAMN05660330_00485	SAMN05660330_03652	Formate C-acetyltransferase.	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	0.841
SDO54784.1	SDP72857.1	SAMN05660330_00485	SAMN05660330_03848	Formate C-acetyltransferase.	Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.866
SDO54784.1	SDP83930.1	SAMN05660330_00485	SAMN05660330_04340	Formate C-acetyltransferase.	Pyruvate formate lyase-like.	0.761
SDO54814.1	SDO54784.1	SAMN05660330_00486	SAMN05660330_00485	Pyruvate formate lyase activating enzyme.	Formate C-acetyltransferase.	0.952
SDO54814.1	SDO54910.1	SAMN05660330_00486	SAMN05660330_00489	Pyruvate formate lyase activating enzyme.	Pyruvate formate lyase activating enzyme.	0.530
SDO54814.1	SDP83930.1	SAMN05660330_00486	SAMN05660330_04340	Pyruvate formate lyase activating enzyme.	Pyruvate formate lyase-like.	0.815
SDO54910.1	SDO54784.1	SAMN05660330_00489	SAMN05660330_00485	Pyruvate formate lyase activating enzyme.	Formate C-acetyltransferase.	0.953
SDO54910.1	SDO54814.1	SAMN05660330_00489	SAMN05660330_00486	Pyruvate formate lyase activating enzyme.	Pyruvate formate lyase activating enzyme.	0.530
SDO54910.1	SDO66046.1	SAMN05660330_00489	SAMN05660330_00756	Pyruvate formate lyase activating enzyme.	Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.766
SDO54910.1	SDP65822.1	SAMN05660330_00489	SAMN05660330_03575	Pyruvate formate lyase activating enzyme.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.760
SDO54910.1	SDP67751.1	SAMN05660330_00489	SAMN05660330_03652	Pyruvate formate lyase activating enzyme.	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	0.964
SDO54910.1	SDP72857.1	SAMN05660330_00489	SAMN05660330_03848	Pyruvate formate lyase activating enzyme.	Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.766
SDO54910.1	SDP83930.1	SAMN05660330_00489	SAMN05660330_04340	Pyruvate formate lyase activating enzyme.	Pyruvate formate lyase-like.	0.889