STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO57199.1Sugar phosphate isomerase/epimerase. (285 aa)    
Predicted Functional Partners:
SDP44587.1
Sulfoacetaldehyde dehydrogenase.
 
 
 0.680
SDO56863.1
Phenazine biosynthesis protein phzE.
    
  0.646
SDP16881.1
Prephenate dehydratase.
    
 0.646
SDP17915.1
Chorismate mutase /prephenate dehydratase.
     
 0.634
SDP67767.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
    
  0.627
SDP29439.1
Adenosine kinase.
  
 
 0.620
SDP51416.1
Fructokinase.
  
 
 0.620
SDP32970.1
Aromatic-amino-acid transaminase.
  
  
 0.602
hisC
Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
  0.527
aroD
3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.
 
  
 0.518
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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