STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO58349.1Two-component system, CitB family, response regulator DcuR. (230 aa)    
Predicted Functional Partners:
SDO58317.1
Two-component system, CitB family, sensor histidine kinase DcuS.
 0.998
SDP29896.1
Hpt domain-containing protein.
 
  
 0.820
SDP51490.1
Signal transduction histidine kinase.
 
  
 0.801
SDP80432.1
Signal transduction histidine kinase.
 
  
 0.796
SDP81262.1
Polar amino acid transport system substrate-binding protein.
    
 0.779
SDO58287.1
Putative tricarboxylic transport membrane protein.
 
    0.773
SDP75706.1
PAS domain S-box-containing protein.
    
 0.773
SDP36473.1
Signal transduction histidine kinase.
    
 0.743
SDP15485.1
Signal transduction histidine kinase.
    
 0.724
SDP80402.1
Signal transduction histidine kinase.
 
  
 0.720
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.