STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO66149.1Protein of unknown function. (382 aa)    
Predicted Functional Partners:
SDO66182.1
Hypothetical protein.
       0.773
SDO74441.1
Delta-60 repeat domain-containing protein.
  
     0.619
SDP21654.1
Methyltransferase domain-containing protein.
  
     0.601
SDO66091.1
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs.
 
     0.541
SDO66120.1
Peptidase family M48.
       0.493
SDO95152.1
Putative DNA primase/helicase.
  
     0.453
SDP49107.1
3-hydroxyacyl-[acyl-carrier-protein] dehydratase.
  
     0.420
SDO76452.1
Hypothetical protein.
  
     0.416
SDP71810.1
Hypothetical protein.
  
     0.416
SDP47033.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
  
     0.415
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.