STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO71499.12,3-dimethylmalate lyase. (288 aa)    
Predicted Functional Partners:
SDP33637.1
2-methylcitrate dehydratase PrpD.
 
  
 0.932
SDP21016.1
Citrate synthase; Belongs to the citrate synthase family.
 
 0.914
SDP25484.1
Citrate synthase; Belongs to the citrate synthase family.
 
 0.913
SDP73045.1
Citrate synthase; Belongs to the citrate synthase family.
 
 0.912
SDO88480.1
Methylitaconate delta2-delta3-isomerase.
 
  
 0.875
SDP72015.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
 0.843
SDP65822.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.838
SDO71583.1
Aspartate aminotransferase.
  
 
 0.831
SDP67751.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.828
SDO75661.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.819
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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