STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO73523.1Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein. (154 aa)    
Predicted Functional Partners:
SDP67751.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.674
SDP67767.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
    
 0.642
SDO56863.1
Phenazine biosynthesis protein phzE.
   
 
 0.629
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
 
 0.610
SDP13463.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.566
SDO50649.1
uroporphyrinogen-III synthase.
  
 
 0.494
SDO73550.1
Hypothetical protein.
       0.448
SDO73580.1
Hypothetical protein.
       0.448
SDO73501.1
Hypothetical protein.
       0.421
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.