STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO79434.1Formylmethanofuran dehydrogenase, subunit E. (206 aa)    
Predicted Functional Partners:
SDP47122.1
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA.
  
  0.885
SDP55218.1
Ni-dependent carbon monoxide dehydrogenase precursor.
  
  
 0.815
SDP17806.1
Formylmethanofuran dehydrogenase, subunit E.
  
  
 
0.803
SDP55335.1
Carbon-monoxide dehydrogenase catalytic subunit.
  
  
 0.793
SDO39891.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.721
SDP55530.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
  0.715
SDP55240.1
acetyl-CoA decarbonylase/synthase beta subunit.
  
  
 0.707
SDP36698.1
Fe-S-cluster-containing dehydrogenase component.
    
  0.655
SDO35452.1
FmdE, Molybdenum formylmethanofuran dehydrogenase operon.
  
     0.654
SDP15252.1
Fe-S-cluster-containing dehydrogenase component.
    
  0.649
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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