STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO80935.1Biotin carboxyl carrier protein. (134 aa)    
Predicted Functional Partners:
SDO57848.1
Pyruvate carboxylase subunit B.
0.999
SDO80729.1
Pyruvate carboxylase subunit B.
 
0.998
SDP46479.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 0.998
SDP71712.1
Pyruvate carboxylase.
 
0.995
SDP72015.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
 0.995
SDO80649.1
propionyl-CoA carboxylase beta chain.
 
 0.985
SDO79138.1
Carboxyl transferase domain-containing protein.
 
 0.983
SDP76819.1
Carboxyl transferase domain-containing protein.
 
 0.983
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.938
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
  
 0.937
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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