STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO88090.1TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (159 aa)    
Predicted Functional Partners:
SDO88061.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.886
SDO88119.1
TRAP transporter, DctM subunit.
 
     0.857
SDO34529.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.655
SDP84013.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.626
SDP42314.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.621
SDP43562.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.575
SDP79250.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.513
SDO89429.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.502
SDP07310.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.493
SDP32572.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.490
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.